The cloverlib.xml is not a blocking error, it probably has nothing to do with your build failure. I can not resolve it.Would you give me a help? Hi,my problem isnot the same with when I run the ant clean dist ,there was the phenomenon: Hi please see this post for a solution contributed by a user who had the same problem: * removing ‘/usr/lib64/R/library/gsalib’Ĭan you try doing a full build (`ant clean dist`) and see if that works?Īlso, what version of the source are you using?Īnt clean dist->ant gsalib,It’s showed the same problem.Download from version as follow: * installing to library ‘/usr/lib64/R/library’ Could not load definitions from resource cloverlib.xml. It may just be a bad environment variable or something I would try to figure out how it got the name of the directory to install to, and why it’s such a funny name. bit/data01/projects/prod_scripts/GATK/gatk-master/build.xml:1039: exec returned: 1 Error: ERROR: no permission to install to directory â I have granted full writing permission to the working directory and files.ġ0:37am /bit/data01/projects/prod_scripts/GATK/gatk-master $ ant gsalibīuildfile: /bit/data01/projects/prod_scripts/GATK/gatk-master/build.xml Thanks! Now I use ant-1.8, but I get a different error message as below. This sounds like an old version of Ant: () Here is the error message.ĥ:00pm /bit/data01/projects/prod_scripts/GATK/gatk-master $ ant gsalib Buildfile: build.xmlīUILD FAILED /bit/data01/projects/prod_scripts/GATK/gatk-master/build.xml:184: The type doesn’t support the “erroronmissingdir” attribute.

For latest documentation and forum click hereĭoes anyone use GATK R Library (gsalib)? I follow the guide at this link (), when I type “ant gsalib” in my linux system with Java 1.6, the building failed. This information is only valid until Dec 31st 2019. IMPORTANT: This is the legacy GATK Forum discussions website.

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